PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216357
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 105aa    MW: 12031 Da    PI: 4.4001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216357genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.2e-171173162
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka....eekewyfFs 62
                   lppGfrFhP+deelv++yL kkv++++ +l   + evd++k+ePwd+p+++++    e++++ fF+
  MDP0000216357 11 LPPGFRFHPRDEELVCDYLMKKVTQSDSTL---MIEVDLNKCEPWDIPENIYTysylETQNTIFFA 73
                   79***********************99666...889************643333344555667775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-16273IPR003441NAC domain
PROSITE profilePS5100516.0511105IPR003441NAC domain
PfamPF023651.1E-81263IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSNISMVEAN LPPGFRFHPR DEELVCDYLM KKVTQSDSTL MIEVDLNKCE PWDIPENIYT  60
YSYLETQNTI FFAVFVPKFV GEVVIATGLA RIVQSVVFLQ LPLPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981233e-56KF198123.1 Malus hupehensis NAC domain protein (NAC88) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294208.17e-35PREDICTED: NAC domain-containing protein 21/22-like isoform X1
RefseqXP_009361751.17e-35PREDICTED: NAC domain-containing protein 21/22-like
RefseqXP_011460868.17e-35PREDICTED: NAC domain-containing protein 21/22-like isoform X2
SwissprotQ84TE62e-23NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLW0C8Y87e-31W0C8Y8_9FABA; NAC domain-containing protein
STRINGPOPTR_0007s08430.14e-30(Populus trichocarpa)
STRINGGLYMA15G40510.15e-29(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2190434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-26NAC family protein